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Internal Standard (IS)

Definition

A compound chemically near-identical to the analyte, often a deuterated isotopologue (d3-morphine, d5-EDDP, d5-alprazolam, pyrene-d10), spiked into every sample at a known concentration before extraction. Quantitation is reported as analyte peak area divided by IS peak area, which corrects for losses during clean-up, injection-volume variation and matrix-effect ion suppression at the source.

Added to
Every sample, calibration standard, and quality control before analysis
Chemical form
Isotopically labelled analogue (deuterium or 13C) of the target compound
Quantitation method
Analyte peak area divided by IS peak area, not absolute signal
Common examples (drugs)
d3-morphine, d5-EDDP, d5-alprazolam, pyrene-d10
Common examples (ethanol)
n-propanol, t-butanol

Common questions

Why add an internal standard if you can just measure the analyte peak?+

Because losses happen everywhere. As your sample moves through extraction, cleanup, and injection, some of it gets left behind or absorbed into container walls. An internal standard traces that loss. When you measure the ratio of analyte peak to IS peak, the losses cancel out. Both compounds lose the same percentage, so the ratio stays true even if the actual signal dropped.

How is an internal standard different from the drug I'm trying to measure?+

It is chemically almost identical, usually a deuterated isotopologue. Deuterium makes it slightly heavier. So in a mass spectrometer, a sample of deuterated morphine (d3-morphine) and real morphine show up as separate peaks even though they behave the same way during extraction and chromatography. That chemical near-identity is the whole point. Your internal standard must suffer the same matrix effects and injection losses as the target compound.

What does the internal standard correct for?+

Three main things: variation in how much sample actually gets injected (injection volume difference between runs), losses during sample preparation (extraction and cleanup), and matrix effects (molecules in the sample that suppress or enhance the ionization of your target in the mass spectrometer). The internal standard absorbs all those problems so your final number is reliable.

Related terms

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