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DAPI

Definition

4',6-diamidino-2-phenylindole; a fluorescent dye that binds double-stranded DNA and emits blue (~460 nm) under UV excitation (~360 nm). Standard nuclear counterstain; used in forensic sperm-head identification to identify nucleated cells.

Full name
4',6-diamidino-2-phenylindole
Binds
Double-stranded DNA
Excitation/emission
~360 nm UV excitation, ~460 nm blue emission
Forensic use
Sperm-head identification via nuclear staining

Common questions

Why is DAPI specifically useful for locating sperm heads on a slide rather than just any cell?+

DAPI stains all nucleated cells, but sperm heads have a distinctively condensed, compact nuclear morphology under fluorescence that is visually different from the larger, more diffuse nuclei of epithelial or white blood cells, so an examiner can distinguish sperm heads from other cell types by shape as well as by staining.

What does a DAPI stain not tell the examiner about a sample?+

DAPI confirms the presence of DNA-containing cells and their morphology but provides no information about whose DNA is present or in what quantity suitable for profiling; it is a locating and screening tool used before DNA extraction and STR typing, not a substitute for them.

Related terms

Autofluorescence
Native fluorescence of endogenous biological molecules (collagen, elastin, NADH, flavins) that produces background signal in fluorescence microscopy, potentially mimicking specific probe signals....
Birefringence
The difference between the highest and lowest refractive indices of an anisotropic mineral, seen as a characteristic interference colour between crossed polars....
Conoscopic Illumination
A convergent polarised beam mode in which a range of angles is passed through the specimen simultaneously, producing an interference figure (optical...
Crossed Nicols
The configuration in which the polariser (below the condenser) and the analyser (above the objective) are oriented at 90 degrees to each...
Dichroic Mirror
A spectrally selective beam splitter that reflects shorter (excitation) wavelengths at 45 degrees and transmits longer (emission) wavelengths, forming the core element...
Epi-Fluorescence Illumination
Fluorescence excitation through the objective lens from above the specimen, with the same objective collecting the emission. A dichroic mirror directs excitation...
Extinction Angle
The angle, measured in degrees on the rotating stage of a petrographic microscope, between a crystallographic reference direction (cleavage trace or crystal...
Michel-Lévy Chart
A birefringence-thickness diagram correlating retardation values with the interference colour seen at that retardation under white-light crossed polars. Standard reference for identifying...
Photobleaching
The irreversible photochemical destruction of a fluorophore by repeated excitation. Limits the observation time for low-copy forensic fluorescence samples. Mitigated by antifade...
Retardation
The path difference (in nm) introduced between the fast and slow ray components as they traverse an anisotropic specimen of given thickness...
Stokes Shift
The wavelength difference between the excitation peak and the emission peak of a fluorophore. A positive Stokes shift (emission at longer wavelength...

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